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guillawme@fediscience.orgundefined

Guillaume Gaullier

@guillawme@fediscience.org
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  • Wanted: open data suitable for a data science project!
    guillawme@fediscience.orgundefined guillawme@fediscience.org

    @JorisMeys Students in bio-engineering might enjoy finding out facts about macromolecular structures from the PDB.

    Both the RCSB PDB and PDBe portals offer APIs to query the meta-data about structures deposited in the PDB:

    https://www.rcsb.org/docs/programmatic-access/web-apis-overview

    https://www.ebi.ac.uk/pdbe/pdbe-rest-api

    The very basics let you replicate the online dashboards on these portals, showing number of entries deposited or released per year. But the APIs give access to every piece of meta-data in there, so you can really ask sophisticated questions. I played a bit with it a while ago, see some examples here: https://guillawme.github.io/insights-from-the-pdb/

    Uncategorized rstats datascience opendata fedihelp education
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